Browsing by Author "Kamarul Rahim Kamarudin"
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Publication Checklist of Marine Fungi and Yeasts Associated with Holothuria (Mertensiothuria) Leucospilota from Pangkor Island(Penerbit UTHM, 2020) ;Mohd Zulhafiz Che Zahri ;Maryam Mohamed Rehan ;Kamarul Rahim Kamarudin ;Fatin Najihah Muhd Lutfi ;Salina Mat RadziAisyah Mohamed RehanMarine microorganisms such as fungi and yeasts can adapt to extreme marine environment conditions and play different roles especially in the nutrient cycling and as bioindicator of ocean change. This study was carried out to isolate and identify fungi and yeasts associated with Holothuria (Mertensiothuria) leucospilota from Pangkor Island, Perak, Malaysia in order to determine their species richness. Two specimens of H. leucospilota were collected from Giam Island and Teluk Nipah Beach of Pangkor Island. Nine samples of fungi and ten samples of yeasts were isolated from the internal and external parts of the H. leucospilota specimens such as cuticle, tentacle, coelomic fluid, cloaca, cuvierian tubules, and surrounding sediment and seawater. Polymerase Chain Reaction (PCR) and DNA sequencing of the Internal Transcribed Spacer (ITS) region were applied for species identification of the microorganisms. Sequence analyses of the ITS region resulted in the identification of five genera of fungi i.e. Cladosporium, Curvularia, Polyporaceae, Acremonium, and Penicillium; and four genera of yeasts i.e. Sterigmatomyces, Pichia, Debaryomyces, and Candida with some of them could be identified up to the species level. The findings have significantly contributed to the recent information on the checklist of fungi and yeasts isolated from the H. leucospilota specimens from Pangkor Island. - Some of the metrics are blocked by yourconsent settings
Publication Identification And Characterization Of Pigmented Bacteria Isolated From Malaysian Seawater(GIAP Journals, 2019) ;Nur Afifah Mursyida Zaujan ;Mohamad Zohdi Othman ;Fatin Najihah Mohd Lutf ;Kamarul Rahim Kamarudin ;Hanina Mohd NoorMaryam Mohamed RehanPurpose of study: Bacteria can naturally produce pigments that can be useful for various applications as they possess antimicrobial metabolites among other numerous benefits towards the human health. This study was carried out to identify the species of marine bacterial isolates PMA, PM3C1 and PM5C1 exhibiting yellow, orange and green colors respectively. Methodology: The current study is using Polymerase Chain Reaction (PCR) amplification and sequence analysis of their 16S rRNA gene. The stability of pigments extracted from the bacterial samples was also analyzed against different temperature and light conditions. Main Findings: Sequence alignment using BLAST revealed that the yellow, orange, and green-pigmented bacteria have 84% similarity with Staphylococcus aureus, 85% similarity with Exiguobacterium profundum and 95% similarity with Pseudomonas aeruginosa respectively. The green pigment showed major changes in color following exposure to sunlight and fluorescent light, and when incubated at 24°C and 50°C. Exposure to direct sunlight also results in the reduction of color for the yellow and orange extracts, while no effect was observed for both pigments under fluorescent light. Incubation at 50°C results in the reduction of the orange color, while the yellow pigment was observed to be unaffected suggesting its stability at high temperature. Implications: Natural pigments production can provide many advantages including reduction of pollution generation, ease of disposal and other benefits to the human health. - Some of the metrics are blocked by yourconsent settings
Publication Species Identification Of Processed Sea Cucumbers From Malaysian Market Based On Concatenated Gene Sequences Of Mitochondrial Rrna Genes(Faculty of International Maritime Studies, Kasetsa, 2019) ;Kamarul Rahim Kamarudin ;Maryam Mohamed RehanAisyah Mohamed RehanSpecies identification of sea cucumbers that have undergone body deformation due to extensive food processing, e.g., beche-de-mer, is difficult, especially with the copresence of cases of unlabelled or mislabelled sea cucumber-based products on the market. Therefore, a study was done to determine the species identities of processed sea cucumbers from selected Malaysian markets using concatenated gene sequences of non-protein-coding 12S and 16S mitochondrial rRNA genes. Phylogenetic analyses, based on the distance-based Neighbor Joining method and character-based methods, i.e., the Maximum Parsimony method, Maximum Likelihood method, and the Bayesian Analysis method, of 47 ingroup sequences, representing 37 processed sea cucumber specimens, 6 reference samples, and 4 additional specimens, suggested the presence of 3 main clusters, i.e., gamat family, consisting of genus Stichopus and genus Thelenota; and timun laut family, comprising family Holothuriidae. A number of 3 gamat species, i.e., Stichopus horrens, Stichopus vastus, and Thelenota anax, were recorded. Meanwhile, the specimens of Holothuria (Halodeima) atra, Holo-thuria (Halodeima) edulis, Holothuria (Metriatyla) lessoni, Holothuria (Merten-siothuria) leucospilota, and Holothuria (Metriatyla) scabra were the 5 timun laut species that are grouped under the family Holothuriidae. The outcomes of this study can be utilised by enforcement agencies to monitor and overcome the issues of species substitution and product mislabelling of processed sea cucumber products in Malaysian markets.