Browsing by Author "Siva Gowri Pathmanathan"
Now showing 1 - 7 of 7
Results Per Page
Sort Options
- Some of the metrics are blocked by yourconsent settings
Publication Comparison of the Compositions of the Stool Microbiotas of Infants Fed Goat Milk Formula, Cow Milk-Based Formula, or Breast Milk(American Society for Microbiology, 2013) ;Gerald W. Tannock ;Blair Lawley ;Karen Munro ;Siva Gowri Pathmanathan ;Shao J. Zhou ;Maria Makrides ;Robert A. Gibson ;Thomas Sullivan ;Colin G. Prosser ;Dianne LowryAlison J. HodgkinsongThe aim of the study was to compare the compositions of the fecal microbiotas of infants fed goat milk formula to those of infants fed cow milk formula or breast milk as the gold standard. Pyrosequencing of 16S rRNA gene sequences was used in the analysis of the microbiotas in stool samples collected from 90 Australian babies (30 in each group) at 2 months of age. Beta-diversity analysis of total microbiota sequences and Lachnospiraceae sequences revealed that they were more similar in breast milk/goat milk comparisons than in breast milk/cow milk comparisons. The Lachnospiraceae were mostly restricted to a single species (Ruminococcus gnavus) in breast milk-fed and goat milk-fed babies compared to a more diverse collection in cow milkfed babies. Bifidobacteriaceae were abundant in the microbiotas of infants in all three groups. Bifidobacterium longum, Bifidobacterium breve, and Bifidobacterium bifidum were the most commonly detected bifidobacterial species. A semiquantitative PCR method was devised to differentiate between B. longum subsp. longum and B. longum subsp. infantis and was used to test stool samples. B. longum subsp. infantis was seldom present in stools, even of breast milk-fed babies. The presence of B. bifidum in the stools of breast milk-fed infants at abundances greater than 10% of the total microbiota was associated with the highest total abundances of Bifidobacteriaceae. When Bifidobacteriaceae abundance was low, Lachnospiraceae abundances were greater. New information about the composition of the fecal microbiota when goat milk formula is used in infant nutrition was thus obtained. - Some of the metrics are blocked by yourconsent settings
Publication Distinct Microrna Expression Pattern in Breast Cancer Cells Following Anti-neoplastic Treatment: A Systematic Review and Functional Analysis of Microrna Target Genes(College of Pathologists, Academy of Medicine Malaysia, 2022) ;Derani Qatrun Nada ;Muhammad Lasim Masniza ;Natasya Abdullah ;Muhamad Marlini ;Marjanu Hikmah Elias ;Siva Gowri Pathmanathan ;Abdul Rahman Hayati ;Fauzi Fadlul Azim ;Adila Abdul HamidMohd Manzor Nur FarihaBreast cancer remains a significant cause of mortality in females worldwide, despite advances in technology and treatment. MicroRNA expression in breast cancer is studied both as potential biomarkers and for therapeutic purposes. Accumulated evidence revealed microRNA profile of various types of cancer cells following antineoplastic treatment. The progression of research in this area provides better understanding on the anti-cancer mechanism of various natural compounds and drugs specifically on the microRNA regulation. Hence, we aim to systematically review differentially expressed microRNA in MCF-7, a commonly studied breast cancer cell line, after treatment with anti-neoplastic agents. Relevant keywords were used to screen for research articles that reported on the differentially expressed microRNAs in experimental models of MCF-7 before and after anti-neoplastic treatment. Target genes of microRNAs were identified from MiRTarbase and further in silico functional analysis of the target genes were performed using DAVID bioinformatic resources. Two upregulated microRNAs (mir-200c and let-7d) and 3 downregulated microRNAs (mir-27a, mir-27b and mir-203) were identified by highest number of studies. Three microRNAs (let-7a, mir-23a and mir-7) showed inconsistent direction of expression. Genes functional analysis revealed the regulatory effect of microRNA on genes related to angiogenesis, hypoxia, P53, FoxO and PI3K-AKT signalling. Clusters of genes associated to the pathway of angiogenesis, cancers, cell proliferation and apoptosis were noted through protein-protein interaction analysis. MicroRNAs, especially the mir-200c, let-7d, mir-27a, mir-27b and mir-203 from this review could be further validated experimentally to serve as molecular target or biomarkers for anti-neoplastic therapy - Some of the metrics are blocked by yourconsent settings
Publication Evaluation of the H1d flagellin gene targeting PCR for detection of Salmonella enterica serovar Typhi(University of Malaya, 2005) ;Thong Kwai Lin ;Siva Gowri PathmanathanPuthucheary S.DA nested-PCR assay targeting the Hl-d flagellin gene was evaluated on 46 Salmonella strains representing 27 different serovars and 13 non-Salmonella strains from eight different bacterial genera. The PCR was highly sensitive as it could detect down to 2 cfu/ml after the nested PCR. The first and second round of PCR amplifications produced the expected amplicons in all the S. Typhi as well as S. Muenchen and S. Stanley strains. The second round of PCR also produced an amplicon of the expected size with the Citrobacterfreundii strain. These findings indicate that the PCR is not completely specific for S. Typhi. The nested-PCR system also posed problems of carryover contaminations. Although highly sensitive, the problem of specificity and carryover contamination questions the reliability of this nested-PCR assay. Therefore there is a need for the development of new PCR assays targeting more specific regions of the S. Typhi genome. - Some of the metrics are blocked by yourconsent settings
Publication Guest Editorial Note: Introduction to the Special Issues of the IHEC 2020 Conference(2021-04) ;Siva Gowri Pathmanathan ;Nur Fariha Mohd Manzor ;Nor Eyzawiah Hassan ;Tengku Amatullah Madeehah T Mohd ;Nuruliza Roslan ;Mohd Hafiz JaafarLukman Anwar ArifinNo abstract - Some of the metrics are blocked by yourconsent settings
Publication Gut Microbiota Composition in Prediabetes and Newly Diagnosed Type 2 Diabetes: A Systematic Review of Observational Studies(Frontiers Media S.A., 2022) ;Geetha Letchumanan ;Natasya Abdullah ;Muhamad Marlini ;Nizam Baharom ;Blair Lawley ;Mohd Rahman Omar ;Fathima Begum Syed Mohideen ;Faizul Helmi Addnan ;Mohd Manzor Nur Fariha ;Zarini IsmailSiva Gowri PathmanathanEvidence of gut microbiota involvement in regulating glucose metabolism and type 2 diabetes mellitus (T2DM) progression is accumulating. The understanding of microbial dysbiosis and specific alterations of gut microbiota composition that occur during the early stages of glucose intolerance, unperturbed by anti-diabetic medications, is especially essential. Hence, this systematic review was conducted to summarise the existing evidence related to microbiota composition and diversity in individuals with prediabetes (preDM) and individuals newly diagnosed with T2DM (newDM) in comparison to individuals with normal glucose tolerance (nonDM). A systematic search of the PubMed, MEDLINE and CINAHL databases were conducted from inception to February 2021 supplemented with manual searches of the list of references. The primary keywords of “type 2 diabetes”, “prediabetes”, “newly-diagnosed” and “gut microbiota” were used. Observational studies that conducted analysis of the gut microbiota of respondents with preDM and newDM were included. The quality of the studies was assessed using the modified Newcastle-Ottawa scale by independent reviewers. A total of 18 studies (5,489 participants) were included. Low gut microbial diversity was generally observed in preDM and newDM when compared to nonDM. Differences in gut microbiota composition between the disease groups and nonDM were inconsistent across the included studies. Four out of the 18 studies found increased abundance of phylum Firmicutes along with decreased abundance of Bacteroidetes in newDM. At the genus/species levels, decreased abundance of Faecalibacterium prausnitzii, Roseburia, Dialister, Flavonifractor, Alistipes, Haemophilus and Akkermansia muciniphila and increased abundance of Lactobacillus, Streptococcus, Escherichia, Veillonella and Collinsella were observed in the disease groups in at least two studies. Lactobacillus was also found to positively correlate with fasting plasma glucose (FPG), HbA1c and/or homeostatic assessment of insulin resistance (HOMA-IR) in four studies. This renders a need for further investigations on the species/strain-specific role of endogenously present Lactobacillus in glucose regulation mechanism and T2DM disease progression. Differences in dietary intake caused significant variation in specific bacterial abundances. More studies are needed to establish more consistent associations, between clinical biomarkers or dietary intake and specific gut bacterial composition in prediabetes and early T2DM. - Some of the metrics are blocked by yourconsent settings
Publication Honey stimulates production of IL-8 chemokine by HT-29 intestinal epithelial cells(Nutrition Society of Malaysia, 2017) ;Siva Gowri Pathmanathan ;Nurul Azmawati M. ;Zarini I. ;Wan Shahida WSAnuar SaniInflammation is a fundamental response the body towards counteracting infections restoring damaged tissues. While inflammation good, excessive inflammation can cause effects including inflammatory bowel (IBD) such as Crohn's disease and colitis. Honey has been used since ancient various kinds of health disorders, many remain to be scientifically proven. Recent studies suggest that manuka honey has potential in the treatment of IBD. In the present the effect of Malaysian honey samples synthesis of the pro-inflammatory chemokine IL-8 by the intestinal epithelial cell line HT-29 was compared to that of manuka honey. The Malaysian honeys tested included one Tualang honey sample and four kelulut honey samples from different places in Peninsular Malaysia. The viability of HT-29 cells when treated with a series of doubling dilutions of honey in culture media (i.e. 50, 25, 12.5, 6.25, 3.125, 1.5625, and 0.3906 mg/mL) was first assessed using MTS cell proliferation assay. Concentration honey at 1mg/mL was used to treat HT-29 cells in subsequent experiments. Lipopolysaccharide (LPS) was used as an inflammatory stimulant. Production of IL-8 by HT-29 cells when treated with the honey samples for 24 hours with or without LPS pre-stimulation was next quantified using ELISA. All honey samples were found to induce production of IL-8 by HT-29 cells at varying levels. While LPS stimulated IL-8 synthesis by HT-29 cells, the addition of honey further enhanced this effect. Further tests are needed to confirm if honey-induced stimulation of IL-8 from intestinal epithelial cells observed herein is partly related to the therapeutic effects of honey in IBD. - Some of the metrics are blocked by yourconsent settings
Publication A Systematic Review Of Prevalence And Risk Factors Of Latent Tuberculosis Infection Among Medical And Nursing Students(Faculty of Medicine and Health Sciences, UPM, 2022) ;Zarini Ismail ;Lailatul Hazzliza Musa ;Muslimah Ithnin ;Nurul Azmawati Mohamed ;Nizam Baharom ;Shalinawati RamliSiva Gowri PathmanathanClinical training may expose medical and nursing students to workplace hazards comparable to those encountered by healthcare workers (HCWs). This study was designed to investigate the prevalence of latent tuberculosis infection (LTBI) and associated risk factors among medical and nursing students. Methods: Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) criteria, a systematic review was conducted utilising four electronic databases to appraise and synthesise the literature on LTBI which used the tuberculin skin test (TST) and the blood interferon-gamma release assay (IGRA). Results: Original articles published in the English language between 2010 and 2020 were included, yielding 14 relevant articles. The average prevalence of LTBI in high-burden countries was 38.2% for TST and 20.6% for the IGRA test. According to TST and IGRA findings, the average prevalence of LTBI in nations with an intermediate burden was 16.7% and 4.7 %, respectively. The average prevalence was 2.8% and 1.1% from the TST and IGRA tests for low-burden countries, respectively. A greater risk of LTBI was shown to be related with an increase in age among postgraduate medical school students, a history of Bacillus Calmette-Guerin (BCG) vaccination, origin from high-risk tuberculosis (TB) countries, increased hours of hospital exposure, a history of contact with TB cases, a high body mass index, older age group students, and a lower TB knowledge score. Conclusion: The available evidence from this review emphasised the importance of developing and implementing efficient and cost-effective TB infection-control programmes, particularly in high-burden countries and amongst students at risk.