Publication:
Genome-wide Comparative Analysis In Discovering Potential Evolved Hypothetical Genes In Infected Oil Palm

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dc.contributor.authorSuhaila Sulaimanen_US
dc.contributor.authorNur Syamimi Yusoffen_US
dc.contributor.authorLee Yang Pingen_US
dc.date.accessioned2024-05-28T03:41:43Z
dc.date.available2024-05-28T03:41:43Z
dc.date.issued2018
dc.date.submitted12/9/2020
dc.description.abstractBased on the genome annotation, oil palm genes can have either known or unknown functions. Hypothetical genes or unknown genes constitute averagely 24.40% from three gene model versions of oil palm (Elaeis guineensis Jacq.). The conventional method to prove their existence is labourious and limited, thus by bioinformatics analysis of genomic and transcriptomicdata, the potential role of hypothetical genes can be scrutinised comprehensively. In this study, the annotated hypotheticalgenes are reanalysed using sequence-based and transcriptomic data analysis to investigate their presence, differential expression and potential horizontal gene transfer (HGT) event with distantly related organisms in infected oil palm. In total 610 sequences still remain as hypothetical whilst others showed similarities with known genes which are not considered as hypothetical anymore. From the 610 genes, 92 are conserved in model plants and non-Plantae and eight genes are potential candidates of HGT events in oil palm with changes of expression during Ganoderma boninense infection. A transferred gene usually possess critical function, thus the presence of true hypothetical genes should not be ignored since it can be served as potential biomarkers of desired traits in oil palm.en_US
dc.identifier.epage88
dc.identifier.issn0126-8643
dc.identifier.issue5
dc.identifier.spage81
dc.identifier.urihttps://oarep.usim.edu.my/handle/123456789/4943
dc.identifier.volume47
dc.language.isoen_USen_US
dc.publisherMalaysian Society of Applied Biologyen_US
dc.relation.ispartofMalaysian Applied Biologyen_US
dc.subjectHypothetical protein, genomic, transcriptomic, oil palm, horizontal gene transferen_US
dc.titleGenome-wide Comparative Analysis In Discovering Potential Evolved Hypothetical Genes In Infected Oil Palmen_US
dc.typeArticleen_US
dspace.entity.typePublication

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