The culture of Trametes gibbosa sp. white-rot fungi (WRF) 3 under mesophilic conditions can lead to the degradation of azo dye compounds. This ability of T. gibbosa sp. WRF 3 is attributed to the released enzymes that are able to catalyze the structural degradation of the azo dye compound. The effect of environmental factors such as carbon sources, nitrogen sources, and pH of growth medium were investigated in this research. The addition of 20 g/L glucose (carbon source) and yeast extract (nitrogen source) at pH 5 of growth medium enhanced the decolorization of Reactive Black 5 (RB5) dye up to 87.07 % within 30 days of incubation. The decolorization of RB5 can be analyzed using UV-vis spectroscopy and differential pulse cathodic stripping voltammetry (DPCSV). The maximum absorbance of RB5 was at 597 nm and decreased after the dye was treated with T. gibbosa sp. WRF 3. In the voltammetric analysis, we examined the effect of pH of Britton-Robinson buffer (BRB) medium on the detection of bis-azo compound of RB5. A stock solution of RB5 was used in the study, and it showed two reduction peak potentials at ?0.5 and ?0.7 V which attributed to the bis-azo bond, whereas the metabolic product showed one reduction peak at ?0.6 V. The GC-MS mass spectrum confirmed the formation of metabolites at tR 4.63 min and m/z of 73 after 30 days of incubation which was sec-butylamine.

The growth of white-rot fungus Pleurotus eryngii F032 in a suitable medium can degrade an azo dye Reactive Black 5 (RB5), because of its ability to produce ligninolytic enzymes such as lignin peroxidase (LiP), manganese peroxidase (MnP), and laccase that able to degrade and transform the complex structure of the dye into a less toxic compound. The effect of environmental factors such as initial concentration of Reactive Black 5, pH, temperature of growth medium, surfactant (Tween 80), and agitation were also investigated. The productions of ligninolytic enzymes were enhanced by increasing the white-rot fungi growth in optimum conditions. The decolorization of Reactive Black 5 were analyzed by using UV�vis spectrophotometer at the maximum absorbance of 596 nm. The white-rot fungus, P. eryngii F032 culture exhibited 93.56 % decolorization of 10 mg/L RB5 within 72 h of incubation in dark condition with agitation. The optimum pH and temperature for the decolorizing activity was recorded at pH 3 and 40 �C, respectively. The addition of surfactant (Tween 80) increased the decolorization to 93.57 % and agitation of growth medium at 120 rpm enhanced the distribution of nutrients to the fungus thus optimized the enzymatic reaction that resulted maximum decolorization of RB5 which was 93.57 %. The molecular docking studies were performed using Chimera visualization software as to analyze the decolorization mechanism of RB5 at molecular level.

Rhizoctonia zeae SOL3 fungus was isolated from contaminated soil based on its ability to decolorize remazol brilliant blue R in solid medium. This fungus has been used to degrade pyrene a four-ring polycyclic aromatic hydrocarbon. R. zeae SOL3 could biodegrade pyrene as a sole source of carbon and energy. Different parameters were investigated to study their effect on the biodegradation rate. The highest biodegradation rate reached at 28 °C, non-agitated culture, 20 g/L glucose, 24 g/L NaCl, and 20 mg/L pyrene. The metabolites of pyrene were detected by thin layer chromatography (TLC) and confirmed by gas chromatography–mass spectrometry (GC-MS), which were identified as benzoic acid, 4-hydroxybenzoic acid and botanic acid.